We will show an example.
gap> R := CompleteGraphScheme(6);; gap> CC := AssociationScheme2Configuration(R, [[1],[2,3,4,5,6]]);; gap> Display(CC); [ [ 0, 1, 1, 1, 1, 1 ], [ 2, 3, 4, 4, 4, 4 ], [ 2, 4, 3, 4, 4, 4 ], [ 2, 4, 4, 3, 4, 4 ], [ 2, 4, 4, 4, 3, 4 ], [ 2, 4, 4, 4, 4, 3 ] ] gap> IsCoherentConfiguration(CC); true